RAS BiologyБиоорганическая химия Russian Journal of Bioorganic Chemistry

  • ISSN (Print) 0132-3423
  • ISSN (Online) 1998-2860

Integration of Software for 3D Tissue Reconstruction Based on Optical Probe Nanotomography Data

PII
S19982860S0132342325040048-1
DOI
10.7868/S1998286025040048
Publication type
Article
Status
Published
Authors
Volume/ Edition
Volume 51 / Issue number 4
Pages
599-606
Abstract
The task of three-dimensional (3D) reconstruction of tissues at the cellular and subcellular level is an integral part of modern biomedical research. Developing 3D reconstruction methods based on atomic force and optical microscopy images enables a more detailed understanding of the morphology and structure of biological specimens at the nanoscale. In the present study, we integrated dedicated software into the workflow of optically probed nanotomography (OPNT) to optimize and standardize the volumetric reconstruction process and demonstrated the capabilities of the enhanced method by reconstructing a fragment of an astrocyte in 3D. The incorporation of 3D Slicer into the OPNT protocol provides a reliable, high-precision platform for the three-dimensional reconstruction of complex biological structures. The proposed approach has practical utility for specialized tasks – such as evaluating the synaptic environment of individual neurons – as well as for a wide range of investigations in biomedical research and materials science.
Keywords
3D-реконструкция атомно-силовая микроскопия оптическо-зондовая нанотомография 3D Slicer астроцит биомедицинские исследования
Date of publication
14.12.2024
Year of publication
2024
Number of purchasers
0
Views
10

References

  1. 1. Jacquemet G., Carisey A.F., Hamidi H., Henriques R., Letterrier C. // J. Cell Sci. 2020. V. 133. P. jcs240713. https://doi.org/10.1242/jcs.240713
  2. 2. Mochalov K.E., Korzhov D.S., Altunina A.V., Agapova O.I., Oleinikov V.A. // Act. Nat. 2024. V. 16. P. 14–29. https://doi.org/10.32607/actanaturae.27323
  3. 3. Solovyevа D.О., Altuninа А.V., Tretyak M.V., Mochalov К.Е., Oleinikov V.А. // Russ. J. Bioorg. Chem. 2024. V. 50. P. 1215–1236. https://doi.org/10.1134/S1068162024040356
  4. 4. Mochalov K.E., Chistyakov A.A., Solovyeva D.O., Mezin A.V., Oleinikov V.A., Vaskan I.S., Molinari M., Agapov I.I., Nabiev I., Efimov F.E. // Ultramicroscopy. 2017. V. 182. P. 118–123. https://doi.org/10.1016/j.ultramic.2017.06.022
  5. 5. Агапова О.И., Ефимов А.Е., Мочалов К.Е., Соловьева Д.О., Гилева А.М., Марквичева Е.А., Яковлев Д.В., Люндуп А.В., Олейников В.А., Агапов И.И., Готье С.В. // Доклады РАН. Науки о жизни. 2023. Т. 509. С. 119–123. https://doi.org/10.31857/S2686738923700178
  6. 6. Агапова О.И., Ефимов А.Е., Мочалов К.Е., Соловьева Д.О., Свирщевская Е.В., Климентов С.М., Попов А.А., Олейников В.А., Агапов И.И., Готье С.В. // Доклады РАН. Науки о жизни. 2022. T. 504. C. 219–222. https://doi.org/10.31857/S2686738922030027
  7. 7. Balashov V., Efimov A., Agapova O., Pogorelov A., Agapov I., Agladze K. // Acta Biomaterialia. 2018. V. 68. P. 214–222. https://doi.org/10.1016/j.actbio.2017.12.031
  8. 8. Fedorov A., Beichel R., Kalpathy-Cramer J., Finet J., Fillion-Robin J-C., Pujol S., Bauer C., Jennings D., Fennessy F.M., Sonka M., Buatti J., Aylward S.R., Miller J.V., Pieper S., Kikinis R. // Magnetic Resonance Imaging. 2012. V. 30. P. 1323–1341. https://doi.org/10.1016/j.mri.2012.05.001
  9. 9. 3D Slicer image computing platform. https://www.slicer.org/
  10. 10. ImageJ. Image Processing and Analysis in Java. https://imagej.net/ij/index.html
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